PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 468aa    MW: 53534.2 Da    PI: 6.0022
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.1e-23125225198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt+sd  ++  l++ +k a+++       +  ++ +++l+++d++g++W++k+ ++++++r++lt+GW+ Fv +++L +gD vvF   +++
  XP_016511480.1 125 FCKALTTSDIKSNWGLSVHRKDANKCfppldmmQ--EKPTQELIVNDLQGNEWRFKHVFQGQPRRHLLTNGWSTFVTSKKLLAGDLVVFL--RDE 215
                     99*****************************643..445569************************************************..569 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     +++l+v+++r
  XP_016511480.1 216 TGKLHVGIRR 225
                     999*****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-35118237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-27120227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-19124225No hitNo description
SMARTSM010191.5E-16125227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802125227IPR003340B3 DNA binding domain
PfamPF023621.1E-20125225IPR003340B3 DNA binding domain
PfamPF065072.2E-5250312IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MVDLLGSNSQ LKHFEGDNAL CREIWRACSG SLLDVPKLGE RVHYFPRLHM DQLEQSSNLE  60
WIQGLQLSHL PRKILCRVLH IRLLVEHDTE EVYAETILLP NQEQNEPSTP EFCPLEPPRP  120
QYQSFCKALT TSDIKSNWGL SVHRKDANKC FPPLDMMQEK PTQELIVNDL QGNEWRFKHV  180
FQGQPRRHLL TNGWSTFVTS KKLLAGDLVV FLRDETGKLH VGIRRLSYQC NSVGSSTFSR  240
QSMEGVLAVA SHAFATRSLF SVYYKPCYNR SSQFIMSLSN YFEGGNHGPG VGTISRTQHS  300
SLDSHVKRTS GMDQMSFPQG QHKTNLLLEE DQYMQDSEAI SNSARPTMMA LEIGQQSVES  360
LNNIHHIEDS VLQPHTAVAR ENNERFIPNE TVAIQAQDEN FDELFKETDF PDFVNTSLDT  420
ITLDWDSDLR STIQDLFRRS LETDLFHIRA TNILPSDVYI FYPKSNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldw_B8e-911831117310Auxin response factor 1
4ldw_A8e-911831117310Auxin response factor 1
4ldv_A8e-911831117310Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0846690.0AB084669.1 Nicotiana tabacum NtWAF mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511480.10.0PREDICTED: auxin response factor 7-like isoform X3
SwissprotQ9ZPY62e-94ARFK_ARATH; Auxin response factor 11
TrEMBLQ76L350.0Q76L35_TOBAC; Auxin response factor
STRINGPGSC0003DMT4000599990.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-95auxin response factor 11